PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00029977-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 189aa    MW: 21323.6 Da    PI: 10.0795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00029977-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-091867654
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        + +Er+RR +++   ++L +l+P   +k++ + ++  + L  A+ YI +L
  WALNUT_00029977-RA 18 KTVERNRRIHMKGLCFKLASLIPAhHFKPSRETVTQLDQLDYATSYITQL 67
                        679*********************888888888***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.5781267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-101682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-101680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-51867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00461873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MKKNISSTDD QASKLDRKTV ERNRRIHMKG LCFKLASLIP AHHFKPSRET VTQLDQLDYA  60
TSYITQLRGK IEKLRLTKER AASSSTSGSS SMSTNMIDHN MTIGTRQLPI VDLRDLGPCI  120
EVVLISGLQK NFMLYEVISI LQEEGADVVS ASFYTAGDKI FHTIHAQVKI SRVGVETSRV  180
RQRLQELIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868974.11e-82PREDICTED: uncharacterized protein LOC107406380
TrEMBLW9RMU02e-77W9RMU0_9R
STRINGPOPTR_0015s08580.16e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.19e-28bHLH family protein